Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
R851L |
G->T at 2684 |
14a |
Arg->Leu at 851 |
IRO, Spain |
Casals T,
Ramos M D, Gimenez J, Nunes V, Estivill X (May 14, 1996) |
Note: (R851L)The above mutation was detected by DGGE and direct sequencing. It was detected in a CF carrier father who had 2 children, both died of CF. The maternal mutation is unknown. Contact: Teresa Casals |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
Q1186X |
C->T at 3688 |
19 |
Gln->Stop codon at 1186 |
Royal Manchester Children's Hospital,
England. |
Haworth A,
Schwarz M, Malone G (Jun 10, 1996) |
K946X |
A->T at 2968 |
15 |
Lys->Stop at 946 |
As above |
As above |
3028delA |
deletion of A at 3028 |
15 |
frameshift |
As above |
Malone G,
Haworth A, Schwarz M (Jun 10, 1996) |
Y917D |
T->G at 2881 |
15 |
Tyr->Asp at 917 |
As above |
Schwarz M,
Malone G, Haworth A (Jun 10, 1996) |
Note: (Q1186X)The mutation was detected by SSCP/heteroduplex analysis and identified by direct DNA sequencing. The mutation was seen in a boy whose other CF mutation was [delta]F508. The patient was referred by Wessex Regional Genetics Laboratory for rare mutation testing. We have seen it only once in over 150 non-[delta]F508 chromosomes tested. (K946X)The mutation was detected by SSCP/heteroduplex analysis and identified by direct DNA sequencing. The mutation was seen in a boy whose other (paternal) CF mutation is still unknown. He is of (very) mixed parentage, his maternal grandparents being Mexican/American Indian and French/English. We have seen K946X only once, in this family referred by the South West Thames Regional Genetics Service. (3028delA)The mutation was detected by SSCP/heteroduplex analysis and identified by direct DNA sequencing. The mutation was seen in a boy (deceased) whose other CF mutation was [delta]F508. We have seen this mutation only once in 120 samples tested. It gives a stop codon at 967. (Y917D)The mutation was detected by SSCP/heteroduplex analysis and identified by direct DNA sequencing. The mutation was seen in a boy (deceased) whose other CF mutation was [delta]F508. We have seen it only once in 120 samples tested. Contact: Martin Schwarz |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
1716-1G->A |
G->A at 1716-1 |
intron 10 |
splicing mutation |
Laboratory of Molecular Pathology,
Sofia, Bulgaria. |
Jordanova A,
Savov A, Angelicheva D, Kremensky I (Jun 20, 1996) |
Note: (1716-1G->A)The mutation is found in a Bulgarian CF patient, who has pancreatic sufficiency and
mild pulmonary involvement. The other mutation of the patient is [Delta]F508. Contact: Albena Jordanova |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
3622insT |
insertion of T after 3622 |
19 |
frameshift |
Genetic Unit,
Department of Pediatrics, All India Institute of Medical Sciences, New Delhi, India. Regional Molecular Genetics Lab, St Mary's Hospital, Manchester, UK. |
Kabra M,
Wallace AJ, Kabra SK, Ghosh M, Verma IC (Jun 21, 1996) |
3601-20T->C |
T->C at 3601-20 |
intron 18 |
mRNA splicing mutant? |
Genetic Unit,
Department of Pediatrics, All India Institute of Medical Sciences, New Delhi, India. Regional Molecular Genetics Lab, St Mary's Hospital, Manchester, UK. |
As above |
T1252P |
A->C at 3886 |
20 |
Thr->Pro at 1252 |
Regional Molecular Genetics Lab,
St Mary's Hospital, Manchester, UK. |
Wallace AJ (Jun 21, 1996) |
V754M |
G->A at 2392 |
13 |
Val->Met at 754 |
As above |
As above |
L137H |
T->A at 542 |
4 |
Leu->His at 137 |
As above |
As above |
4095+42T/C |
T or C at 4095+42 |
intron 21 |
polymorphism? |
As above |
As above |
1716+77A/G |
A or G at 1716+77 |
intron 10 |
polymorphism |
As above |
As above |
4006-103delT |
deletion of T at 4006-103 |
intron 20 |
polymorphism? |
As above |
As above |
Note: (3622insT)The above mutation was detected by SSCP/heteroduplex analysis and characterised by direct sequencing. It has not been observed previously on over 100 non-[delta]F508 CF chromosomes.
3622insT was observed in a 12 year old South Indian boy with high sweat chloride and features highly suggestive of CF. He was homozygous for this mutation. This mutation was not observed on 36 non-[delta]F508 chromosomes from suspected Indian CF patients.
This work was supported by the British Paediatric Association
(BPA). (3601-20T->C)The above mutation was detected by SSCP/heteroduplex analysis and characterised by direct sequencing. It has not been observed previously on over 100 non-[delta]F508 CF chromosomes. 3601-20T->C was observed in two heterozygous patients both from North India. One of the patients died in infancy from Pseudomonas pneumonia and no sweat tests were carried out on this patient. The second patient has failure to thrive and recurrent chest infections with a borderline sweat test. No other mutation has been identified yet in either patient. 3601-20T>C creates a novel Psp1406I site. This work was supported by the British Paediatric Association (BPA). (T1252P)The above mutation was detected by SSCP/heteroduplex analysis and characterised by direct sequencing. None of the reported changes have been observed previously on over 100 non-[delta]F508 CF chromosomes. T1252P was observed in an 8 month old male child with CF symptoms who was referred from the Liverpool DNA lab by Roger Mountford. We have few clinical details although his other mutation is [delta]F508. T1252P destroys an RsaI site. (V754M)The above mutation was detected by SSCP/heteroduplex analysis and characterised by direct sequencing. It has not been observed previously on over 100 non-[delta]F508 CF chromosomes. V754M was observed in a 14 year old male clinically affected by CF and referred from the Liverpool DNA lab by Roger Mountford. His sweat tests are positive although his respiratory involvement is very mild. His other mutation is G542X. V754M creates a novel NlaIII site. (L137H)The above mutation was detected by SSCP/heteroduplex analysis and characterised by direct sequencing. It was not previously observed in over 100 non-[delta]F508 CF chromosomes. L137H was observed in an adult male presenting only with male infertility due to CBAVD. This sample was referred from the Leeds DNA lab by Lucy Ellis. His other mutation is [delta]F508. (4095+42T/C)The presumed polymorphism was detected by SSCP/heteroduplex analysis and characterised by direct sequencing. It has not been observed previously on over 100 non-[delta]F508 CF chromosomes. 4095+42T/C was observed in a S African patient who claimed to have mild CF when young, no other mutation has been identified but we feel that this is likely to be a polymorphism. (1716+77A/G)The above polymorphism was detected by SSCP/heteroduplex analysis and characterised by direct sequencing. It has not been observed previously on over 100 non-[delta]F508 CF chromosomes. The G variant of 1716+77A/G was observed in a 15 yr old Asian patient who had a borderline sweat test but features not strongly suggestive of CF. No other mutation was identified. (4006-103delT)The presumed polymorphism was detected by SSCP/heteroduplex analysis and characterised by direct sequencing. It has not been observed previously on over 100 non-[delta]F508 CF chromosomes. 4006-103delT was observed in a normal adult female undergoing screening due to infertility treatment for her partner who was a [delta]F508 carrier and who had CBAVD. This change is highly likely to be a polymorphism. Contact: Andrew Wallace |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
3922del10->C |
deletion of 10 bp from 3922 and replacement with 3921 |
20 |
deletion of Glu1264 to Glu1266 |
Royal Manchester Children's Hospital,
England. |
Schwarz M.
Malone G, Haworth A (Jun 24, 1996) |
Note: (3922del10->C)This complex mutation deletes 10 bp and replaces with one C residue. The net result is an in-frame deletion of 3 whole codons (1264-1266).
The mutation was detected by SSCP/heteroduplex analysis and identified by direct DNA sequencing. The mutation was seen in a boy whose other CF mutation was [delta]F508. The patient was referred by West Midlands Regional Genetics Service for rare mutation testing. We have seen it only once in over 150 non-[delta]F508 chromosomes tested.
Contact: Martin Schwarz |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
R352W |
C->T at 1186 |
7 |
Arg->Trp at 352 |
Royal Manchester Children's Hospital,
England. |
Byrne K,
Malone G, Haworth A, Schwarz M (Jun 28, 1996) |
Note: (R352W)The mutation was detected by SSCP/heteroduplex analysis and identified by direct DNA sequencing. The mutation was seen in a boy referred by West Midlands Regional Genetics Service, and whose other CF mutation was [delta]F508. We have seen it only once in over 150 samples tested. Contact: Martin Schwarz |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
S13F |
C->T at 170 |
1 |
Ser->Phe at 13 |
Istituto di Clinica e Biologia dell'Eta Evolutiva |
Cao A,
Leoni G, Rosatelli M (Jul 03, 1996) |
Note: (S13F)This mutation was detected by DGGE and identified by direct sequencing in a CF patient of Sardinian origin. Contact: Antonio Cao |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
G544V |
G->T at 1763 |
11 |
Gly->Val at 544 (CBAVD) |
Institut de Biologie Montpellier, France |
Claustres M,
Guittard C, De Meeus A, Carles S (Jul 05, 1996) |
Note: (G544V)This putative mutation was found by DGGE and identified by direct sequencing in a CBAVD patient from
Southern France. It creates a MmeI restriction site. Contact: Mireille Claustres |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
1309delG |
deletion of G at 1309 |
8 |
frameshift |
Royal Manchester Children's Hospital,
England. |
Malone G,
Haworth A, Schwarz M (Jul 05, 1996) |
Note: (1309delG)The mutation was detected by DGGE and identified by direct DNA sequencing. The mutation was found in a CF patient whose other chromosome carries [delta]F508. We have seen this mutation only once in 150 non-[delta]F508 chromosomes screened. The DGGE primers were generously supplied by Prof. Michel Goossens on behalf of the European Community Concerted Action for the Co-ordination of Cystic Fibrosis Research and Therapy.
Contact: Martin Schwarz |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
412del7->TA |
deletion of ACCAAAG from 412 and insertion of TA |
4 |
frameshift |
Service de Biochimie Endocrinienne et Moléculaire,
Hopital Debrousse |
Michel-Calemard L,
Bey Omar F, Morel Y (Jul 10, 1996) |
Q634X |
T->A at 2032 |
13 |
Gln->Stop at 634 |
Service de Biochimie Endocrinienne et Mol�culaire,
Hopital Debrousse |
As above |
W1098X(3426G->A) |
G->A at 3426 |
17b |
Trp->Stop at 1098 |
As above |
As above |
1812-136T/C |
T or C at 1812-136 |
intron 12 |
polymorphism |
As above |
As above |
Note: (412del7->TA)Mutation 412del7->TA is a complex mutation due to deletion in exon 4 of ACCAAAG from 412 and insertion of TA. It is responsible for a frameshift and creation of a stop codon downstream. (Q634X)The mutation was found in the CFTR gene by direct sequencing. Mutation Q634X in exon 13 (T->A at 2032) was found once in a French CF chromosome associated with the A haplotype. The patient carries [delta]F508 on her other chromosome. (W1098X(3426G->A))Mutation W1098X (G->A at 3426) in exon 17b is the same mutation as described by Macek (NL#58) but is due to a different nucleotide change. The mutation was found by direct sequencing. Surprisingly the patient, whose parents do not seem to be consanguineous, is homozygous for this mutation. (1812-136T/C)The polymorphism was found in the CFTR gene by direct sequencing. Contact: Yves Morel |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
G1247R |
G->A at 3871 |
20 |
Gly->Arg at 1247 |
IRO,
Spain. Lab. Genetika, Brazil |
Casals T,
Ramos MD, Gimenez J, Nunes V, Estivill X. Faucz F, Raskin S. (Jul 19, 1996) |
565delC |
deletion of C at 565 |
4 |
frameshift |
As above |
As above |
I148N |
T->A at 575 |
4 |
Ile->Asn at 148 |
As above |
As above |
Note: (G1247R)Patient was from Brazil and is of Afro-American origin. The G1247R mutation was detected by DGGE and direct sequencing. The patient is homozygous for the mutation, with PI and mild lung disease. (565delC)Patient was from Brazil and of Afro-American origin. The 565delC mutation was detected by SSCA and direct sequencing. The patient also carries mutation P5 (?) and he is PI with mild lung disease. (I148N)Patient was from Brazil and of Afro-American origin. The mutation was detected by SSCA and direct sequencing. Contact: Teresa Casals |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
G241R |
G->A at 852 |
6a |
Gly->Arg at 241 |
Laboratoire de Biogénétique, Brest, France |
Férec C,
Verlingue C, Mercier B, Quere I (Jul 31, 1996) |
Note: (G241R)Identified by DGGE and direct sequencing. Contact: Claude Férec |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
C225X |
T->A at 807 |
6a |
Cys->Stop at 225 |
�tablissement de Transfusion Sanguine de Bretagne Occidentale, Brest, France |
Mercier B (Aug 07, 1996) |
Note: (C225X)No further description. Contact: Claude Férec |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
3850-129T/C |
T or C at 3850-129 |
intron 19 |
polymorphism |
IRO,
Barcelona, Spain. |
Casals T,
Gimenez J, Ramos MD, Nunes V, Estivill X. (Aug 08, 1996) |
Q552K |
C->A at 1786 |
11 |
Gln->Lys |
Lab. Genetika,
Curitiba, Brazil. IRO, Barcelona, Spain. |
Faucz F,
Raskin S. Casals T, Gimenez J, Ramos MD, Nunes V, Estivill X. (Aug 08, 1996) |
1716+85C/T |
C or T at 1716+85 |
intron 10 |
polymorphism |
As above |
As above |
W1282G |
T->G at 3976 |
20 |
Trp->Gly at 1282 |
As above |
As above |
Note: (3850-129T/C)The presumed polymorphism 3850-129T/C was detected by DGGE in a Spanish patient. (Q552K)The mutation Q552K was detected by DGGE and direct sequencing in a patient from Brazil (Afro-American origin), he is homozygous for this mutation, with PI and mild lung involvement. (1716+85C/T)The polymorphism 1716+85C/T was detected by SSCA in a patient from Brazil (Caucasian origin). (W1282G)The mutation W1282G was detected by DGGE and direct sequencing in a patient from Brazil (Caucasian origin), she carries [delta]F508 on the other chromosome and he presents PI and mild lung disease. Contact: Teresa Casals |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
G576A |
G->C at 1859 |
12 |
Gly->Ala at 576 (CAVD) |
Royal Manchester Children's Hospital,
England |
Sarginson J,
Malone G, Haworth A, Schwarz M (Aug 13, 1996) |
Note: (G576A)The mutation was detected by DGGE analysis and identified by direct DNA sequencing.
The mutation was seen in a 45 year-old male with absence of the vas deferens, who also has [delta]F508. We have seen it only once, in over 100 non-[delta]F508 chromosomes screened, in this man referred by the Oxford Medical Genetics Laboratories (UK). The DGGE primers were generously supplied by Prof. Michel Goossens on behalf of the European Community Concerned Action for the Co-ordination of Cystic Fibrosis Research and Therapy. Contact: Martin Schwarz |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
174delA |
deletion of A between 172-174 |
1 |
frameshift |
Institut fur Humangenetik, Medezinische Hochschule Hannover,
Hannover, Germany. |
D�rk T,
El-Harith E-H, Ellemunter H, Schmidtke J, Stuhrmann M (Aug 13, 1996) |
406-2A->G |
A->G at 406-2 |
intron 3 |
splicing mutation |
As above |
As above |
R334L |
G->T at 1133 |
7 |
Arg->Leu at 334 |
As above |
As above |
4108delT |
deletion of T at 4108 |
22 |
frameshift |
As above |
As above |
K1351E |
A->G at 4183 |
22 |
Lys->Glu at 1351 (CBAVD) |
As above |
As above |
Note: (174delA)frameshift mutation 174delA was identified in a heterozygous CBAVD patient with a yet uncharacterized other allele.
(406-2A->G)Splice mutation 406-2 A->G was detected in a homozygous CF patient from the United Arabian Emirates. (R334L)Missense mutation E334L was detected in a German CBAVD patient who is compound heterozygous for the R334L and I336K mutations. (4108delT)Frameshift mutation 4108delT was found in an Austrian CF patient from Tyrol who is heterozygous for this mutation and for [delta]F508. (K1351E)Missense mutation K1351E was identified in a German CBAVD patient who is heterozygous for this mutation and for [delta]F508. Contact: Manfred Stuhrmann-Spangenberg |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
L1093P |
T->C at 3410 |
17b |
Leu->Pro at 1093 |
Stanford University,
Stanford, California. |
Wine J,
Robinson C, Law T, Moss R (Aug 19, 1996) |
Note: (L1093P)The above mutation was found by SSCP/HA in a compound heterozygote; the other mutation is N1303K. The patient is Caucasian, has pancreatic insufficiency, elevated sweat chloride concentrations (116 mEg/L on 12/13/67), and pulmonary disease that required a lung transplant.
Contact: Jeffrey Wine |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
L101X |
T->G at 434 |
4 |
Leu->Stop at 101 |
IRO, Barcelona, Spain; National Research Institute, Warsaw, Poland. |
Casals T,
Gimenez J, Ramos MD, Nunes V, Estivill X, Bal J (Aug 20, 1996) |
Note: (L101X)The L101X mutation was detected by SSCA and direct sequencing in a Polish CF patient. She is 18 years old and she carries a [delta]F508 on the other chromosome. She presents PI and lung disease with Pseudomonas colonization. Contact: Teresa Casals |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
1248+52T/C |
T or C at 1248 |
intron 7 |
polymorphism |
Laboratory of Molecular Pathology,
Sofia, Bulgaria |
Jordanova A,
Kalaydjieva L, Claustres M (Aug 21, 1996) |
Note: (1248+52T/C)The above sequence alteration was detected by SSCP analysis and identified by direct sequencing. It was found in one French patient as a result of a collaborative study between the Laboratory of Molecular Pathology in Sofia, Bulgaria and Laboratoire de Biochimie G�n�tique, Montpellier, France. Contact: Mireille Claustres |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
CFTR14b-18del |
deletion of 20 kb from exons 14b through 18 |
14b-18 |
deletion of amino acids 874-1156 |
SUNY Health Science Center,
Syracuse, New York. |
Shrimpton A E,
Borowitz D (Aug 28, 1996) |
Note: (CFTR14b-18del)This patient also carried the Y1092X CF mutation in exon 17b. Exons 14b through 18 are deleted resulting in an inframe deletion of 238 amino acids, which make up the second membrane spanning domain. The size of this deletion is between 11kb and 34kb. His sweat Cl- level was 102. He was diagnosed at birth when he presented with meconium ileus. He required a right upper lobectomy at 10 years of age, followed by a total right pneumonactomy. As a young teenager he developed hepatic cirrhosis with portal hypertension, hyperspenism and coagulopathy. He had several episodes of bleeding esophageal varices treated with sclerotherapy. At age 19 he had a gastrostomy placed for enteral feeding. He developed CF related diabetes at age 21 requiring treatment with insulin. As an older teenager he began to have hemoptysis, at age 20 he began to have episodes of massive heoptysis. He was found to have a right bronchopleural fistula which was treated with gluc-ing procedure. However, hemoptysis continued and he ultimately underwent multiple bronchial artery embolizations. During the final years of his life he was oxygen dependent and had cor pulmonale with carbon dioxide retention. He ultimately died of respiratory failure at age 26 1/2. He had severe CF. Contact: Antony E. Shrimpton |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
3040+2T->C |
T->C at 3040+2 |
intron 15 |
splice mutation |
G�n�tique Humaine, Centre H�spitalier Universitaire de LIEGE,
Liege, Belgium. |
Poncin J (Aug 30, 1996) |
4006-14C->G |
C->G at 4006-14 |
intron 20 |
splice mutation? |
As above |
As above |
F1300L |
T->C at 4030 |
21 |
Phe->Leu at 1300 |
Génétique Humaine, Centre Hôspitalier Universitaire de LIEGE,
Liege, Belgium. |
As above |
Note: (3040+2T->C)Mutation 3040+2T->C, was identified in a CF patient who carries the [delta]F508 mutation on the other chromosome; this mutation alters the second nucleotide of intron 15 (splicing donor site).
The above mutation was identified by DGGE analysis and confirmed by DNA sequencing.
(4006-14C->G)The sequence change was identified in a CF patient with no previously known mutation; this presumed mutation could alter the intron 20 splicing but that is not certain. The above mutation was identified by DGGE analysis and confirmed by DNA sequencing. (F1300L)Mutation F1300L (4030 T-C; exon 21) was identified in a normal individual. It could be a mutation or a polymorphism. The above mutation was identified by DGGE analysis and confiremed by DNA sequencing. Contact: Jacques Poncin |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
I1234L |
A->C at 3832 |
19 |
polymorphism |
Laboratoire de Biogénétique,
Brest, France |
Férec C,
Verlingue C, Mercier B, Quere I (Sep 05, 1996) |
Note: (I1234L)The polymorphism was identified by DGGE and direct sequencing of a carrier mother. Since it was not detected in her affected child, we concluded that it was a polymorphism. Contact: Claude Férec |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
S1206X |
C->G at 3749 |
19 |
Ser->Stop at 1206 |
Laboratoire de Biogénétique, Brest, France |
Férec C,
Verlingue C, Quere I, Mercier B (Sep 12, 1996) |
Note: (S1206X)The mutation was dentified by DGGE and direct sequencing.
Contact: Claude Férec |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
2967G/A |
G or A at 2967 |
15 |
polymorphism (no change for Ser at 945) |
Laboratoire de Biochimie Génétique, Pavillon Cassini,
Paris, France. |
Bienvenu T,
Borde P, Bousquet S, Herbulot C, Beldjord C (Sep 19, 1996) |
Note: (2967G/A)We would like to report to the consortium one novel sequence variation located in exon 15 of the CFTR gene. This polymorphism S945S (TCG->TCA; 2967 G->A) was found by DGGE using chemical clamps and identified by direct sequencing. This nucleotide substitution destroys a Taql restriction site, like the S945L mutation. Contact: Thierry Bienvenu |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
R933S |
A->T at 2931 |
15 |
Arg->Ser at 933 (CBAVD) |
Institut fur Humangenetik, Medizinische Hochschule Hannover,
Hannover, Germany. |
D�rk T,
Schmidtke J, Stuhrmann M (Sep 23, 1996) |
1341+1G->A |
G->A at 1341+1 |
intron 8 |
splicing mutation |
As above |
As above |
V938G |
T->G at 2945 |
15 |
Val->Gly at 938 (CAVD) |
As above |
As above |
4269-139G/A |
G or A at 4269-139 |
intron 22 |
polymorphism |
As above |
As above |
Note: (R933S)R933S was found in a German patient with CBAVD who is also heterozygous for [delta]F508. (1341+1G->A)Splicing mutation 1341+1 G->A was identified in a German CF patient who is heterozygous for this mutation and for [delta]F508. (V938G)V938G was identified in two patients, one homozygote with CUAVD, and one heterozygote with CBAVD and carrying the previously reported 174delA mutation. (4269-139G/A)Sequence variation 4269-139 G->A in intron 22 is a frequent polymorphism located in the primer binding site of Consortium primer 23i-5. We also find a sequence correction, GC instead of CG at 4269-145/144 within this site. These changes can result in an allele-specific suppression of PCR amplification if primer 23i-5 is used under stringent conditions. Contact: Manfred Stuhrmann-Spangenberg |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
232del18 |
Deletion of 18 bp from 232 |
2 |
Deletion of 6 aa from Leu34 to Gln39 |
Lab. Genetika, Curitiba, Brazil;
IRO, Barcelona, Spain . |
Faucz F,
Raskin S, Casals T, Ramos MD, Gimenez J, Nunes V, Estivill X (Sep 25, 1996) |
Note: (232del18)The above mutation was detected by SSCA and direct sequencing in a patient from Brazil (Caucasian origin). He carries [delta]F508 on the other chromosome and he presents PI and mild lung disease. Contact: Teresa Casals |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
L138ins |
insertion of CTA, TAC or ACT at nucleotide 544, 545 or 546 |
4 |
insertion of leucine at 138 |
Insitut fur Humangenetik, Medezinische Hochschule Hannover,
Hannover, Germany. |
D�rk T,
Schmidtke J, Stuhrmann M (Oct 06, 1996) |
L568F |
G->T at 1836 |
12 |
Leu->Phe at 568 (CBAVD?) |
As above |
As above |
E56K |
G->A at 298 |
3 |
Glu->Lys at 56 |
As above |
As above |
D58N |
G->A at 304 |
3 |
Asp->Asn at 58 |
As above |
As above |
Note: (L138ins)Missense mutations D58N, L568F and the leucine insertion at position 138 were all found in heterozygous CBAVD patients with yet unidentified mutations on their other alleles. We have chosen the symbol [inverse-delta] to designate an amino acid insertion but other proposals would be similarly welcome.
L-CT NOTE: L138ins is assigned to this mutation, according to the newly recommended guideline. (L568F)L568F was found in a heterozygous CBAVD patient with yet unidentified mutations on their other alleles. (E56K)Missense mutation E56K was identified in a German CBAVD patient heterozygous for this mutation and for [delta]F508. (D58N)Missense mutations D58N was found in a CBAVD patient with an yet unidentified mutation on his other allele. Contact: Manfred Stuhrmann-Spangenberg |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
D1445N |
G->A at 4465 |
24 |
Asp->Asn at 1445 |
Athens University, First Dept of Pediatrics, Unit of Molecular Medicine
St. Sophias Children Hospital Athens, Greece. |
Antoniadi T,
Tzetis M, Kanavakis E (Oct 07, 1996) |
Note: (D1445N)Consequence: Missence mutation. The G to A substitution at nucleotide 4465 results in the replacement of Aspartic acid for Asparagine at amino acid 1445. The mutation has not been found in 56 normal chromosomes screened.
Frequency: 0.2% (1/500 chromosomes)
Patient data: Genotype: D1445N/Unknown
The trans mutation of the patient remains unknown
although he has been screened for all the exons and
intron-exon boundaries.
Age at diagnosis: 2 yrs
Current age: 16 yrs
Chloride sweat test: 110mEq/L
He is pancreatic insufficient and has chronic cough. Contact: Emmanuel Kanavakis |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
M1028I |
G->T at 3216 |
17a |
Met->Ile at 1028 |
Bogazici University,
Istanbul, Turkey The Hospital for Sick Children, Toronto, Canada |
Onay T,
Kirdar B, Zielenski J, Markiewicz D, Tsui L-C (Oct 07, 1996) |
P1013L |
C->T at 3169 |
17a |
Pro->Leu at 1013 |
As above |
As above |
3172delAC |
deletion of AC from 3172 |
17a |
frameshift |
As above |
As above |
L218X |
T->A at 785 |
6a |
Leu->Stop at 218 |
The Hospital for Sick Children,
Toronto, Canada |
Zielenski J,
Markiewicz D, Tsui L-C (Oct 07, 1996) |
1249-29delAT |
deletion of AT from 1249-29 |
intron 8 |
splicing mutation? |
The Hospital for Sick Children,
Toronto, Canada Bogazici University, Istanbul, Turkey |
Zielenski J,
Markiewicz D, Tsui L-C, Onay T, Kirdar B (Oct 07, 1996) |
Note: (M1028I)The mutation was detected by heteroduplex analysis. It was found in a Turkish CF patient. The second mutation: unknown. Clinical symptoms: high sweat Cl-, malabsorbtion, gastrointestinal symptoms. (P1013L)The mutation was detected by heteroduplex analysis. It was found in a Turkish CF patient. The second mutation: unknown. (3172delAC)The mutation was detected by heteroduplex analysis. It was found in a Turkish CF patient. The second mutation: F1052V. Clinical symptoms: elevated sweat Cl-, liver cirrhosis. (L218X)The mutation was detected by heteroduplex analysis. It was found in a Pakistani CF patient. The second mutation: unknown. (1249-29delAT)The mutation was detected by heteroduplex analysis. It was found in one Caucasian CF patient. The second mutation: [delta]F508. Contact: Julian Zielenski |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
N287Y |
A->T at 911 |
6b |
Asn->Tyr at 287 |
SUNY Health Science Center,
Syracuse, New York. |
Shrimpton A E,
Borowitz D (Oct 09, 1996) |
R1070P |
3341 G->C |
17b |
Arg->Pro at 1070 |
SUNY Health Science Center,
Syracuse, New York |
As above |
1259insA |
insertion of A after 1259 |
8 |
frameshift |
As above |
Shrimpton AE,
Swender P (Oct 09, 1996) |
Note: (N287Y)This individual was a compound heterozygote for [delta]F508. He was diagnosed at 3 1/2 years of age when referred because of rectal prolapse; his sweat Cl was 75 and 81 mEq/L. He had been totally healthy since birth with normal growth and no significant gastrointestinal complaints. He had 4-5 upper respiratory infections per year. Formal pancreatic function testing was within normal limits. A vas deferens was identified on the side of the herniorraphy. He has grown along the fiftieth percentile for weight and the ninetieth for height without the use of pancreatic enzyme supplements. N287Y was originally identified by SSCA and HA and was subsequently detected by artificial Dra I site generating PCR amplification. (R1070P)This 26 year old individual of Polish extraction with mild CF presented at age 11 with nasal polyps. He had noted salt crystals on his skin in warm weather, but did not hava a chronic cough or gastrointestinal complaints. Pulmonary function tests and chest X-ray were normal. Sweat chloride was 121 mMol/L (repeat value was 104 mMol/L). No formal pancreatic function testing was performed. Most recent pulmonary function tests show mild obstructive airways disease. This individual is a compound heterozygote for the 2143delT CF mutations. R1070P was originally detected by SSC/HA and can be detected by virtue of the creation of a Sau96I or destruction of a BslI site. Mutation R1070P was also reported by D�rk T, Hughes D, Dworniczak B, Stuhrmann M (Jan 30, (NL#69)) in a CF patient from Northern Ireland who carried R1070P on his paternal and [delta]F508 on his maternal allele. (1259insA)Found once in an individual who is a compound heterozygote for the 1717-1G->A. This mutation results in the increase of a string of A's into five which is expected to lead to the premature termination of product due to the formation of a TAA stop codon four codons downstream at codon position 381. Detection by SSC/HA. This mutation was shown to have been inherited from the parent without 1717-1G->A. This mutation can be detected by SSCA and HA. Contact: Antony E. Shrimpton |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
1813insC |
insertion of C after 1813 (or 1814) |
12 |
frameshift |
Department of Medical Genetics, Faculty of Medical Sciences, University of Groningen,
The Netherlands |
Scheffer H,
Wu Y, Hofstra R, Looman M, Buys C (Oct 23, 1996) |
Note: (1813insC)This mutation was detected by DGGE and identified by direct sequencing. The frameshift would lead to a downstream stop codon in the CFTR mRNA. This mutation was found in a female with CF carrying the [delta]F508 mutation on the other allele. The mutation was not observed in 100 other CFTR alleles from 50 unrelated individuals without CF history in their families. Contact: Hans Scheffer |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
E672del |
deletion of 3 bp between 2145-2148 |
13 |
deletion of Glu at 672 |
Institut de Biologie Montpelier |
Claustres M,
Guittard C, Desgorges M, Carles S (Oct 28, 1996) |
2377C/T |
C or T at 2377 |
13 |
polymorphism (no change for Leu at 749) |
As above |
As above |
Note: (E672del)This mutation was found by DGGE and identified by direct sequencing in a lebanese family.
It does not modified a RS. (2377C/T)This polymorphism was found by DGGE and identified by direct sequencing in a CBAVD from Southern France. It does not modified a RS. Contact: Mireille Claustres |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
1263insG |
insertion of G after 1263 |
8 |
frameshift |
Bogazici University,
Istanbul, Turkey The Hospital for Sick Children, Toronto, Canada |
Onay T,
Kirdar B, Zielenski J, Markiewicz D, Tsui L-C (Oct 28, 1996) |
Note: (1263insG)The mutation was detected by heteroduplex analysis in one chromosome of a Turkish CF patient. Genotype: (1263insG/[delta]F508). Contact: Lap-Chee Tsui |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
IVS14a+17del5 |
5 bp deletion between 2751+17 and 2751+24 |
intron 14a |
polymorphism? |
Institut de Biologie Montpelier |
Claustres M,
Guittard C, Desgorges M, Carles S (Nov 06, 1996) |
Note: (IVS14a+17del5)This polymorphism was found by DGGE and identified by direct sequencing in a Lebanese family.
It was detected in a CF patient's father with [delta]F508 on the other chromosome.
It does not modify a RS. Contact: Mireille Claustres |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
3600+42G/A |
G or A at 3600+42 |
intron 18 |
polymorphism? |
Institut fur Humangenetik,
Medizinische Hachschule Hannover, Hannover, Germany |
D�rk T,
El-Harith E-H A, Schmidtke J, Stuhrmann M (Nov 21, 1996) |
3500-44G/A |
G or A at 3500-44 |
intron 17b |
polymorphism? |
As above |
As above |
1548delG |
deletion of G from 1548-1550 |
10 |
frameshift |
As above |
As above |
712-92T/A |
T or A at 712-92 |
intron 5 |
polymorphism |
As above |
As above |
295ins8 |
insertion of ATTGGAAA after 295 |
2 |
frameshift |
As above |
As above |
Note: (3600+42G/A)The intron 18 variant was only observed once in an individual suspected to have CF. (3500-44G/A)The intron 17b variant was only observed once in an individual suspected to have CF. (1548delG)frameshift mutation 1548delG was detected in a Saudi-Arabian CF family where the father carried 1548delG and the mother N1303K. (712-92T/A)712-92T->A was seen in a single CBAVD patient with no other known CFTR mutations. (295ins8)The 8bp insertion was identified in a German CF patient heterozygous for the insertion and for [delta]F508. Contact: Manfred Stuhrmann-Spangenberg |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
1294del7 |
deletion of 7 bp from 1294 |
8 |
frameshift |
Department of Medical Genetics
University of Groningen, Faculty of Medical Sciences Groningen, The Netherlands |
Scheffer H,
Wu Y, Hofstra R, Looman M, Buys C (Nov 26, 1996) |
Note: (1294del7)The mutation was detected by DGGE and identified by direct sequencing. The defect is a deletion of seven nucleotides at position 1294 in exon 8 (1294del7). This mutation will lead to a downstream stopcodon in the CFTR mRNA. This mutation has been found in a male with CF carrying the [delta]F508 mutation on the other allele. Contact: Hans Scheffer |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
P111A |
C->G at 463 |
4 |
Pro->Ala at 111 |
Laboratoire de Biogénétique,
University of Brest Brest, France |
Férec C,
Verlingue C, Quere I, Mercier B (Nov 28, 1996) |
Note: (P111A)The mutation was identified by DGGE and direct DNA sequencing in a CBAVD patient. He has a stop mutation R553X on the other allele. Contact: Claude Férec |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
L997F |
G->C at 3123 |
17a |
Leu->Phe at 997 |
Genetic Unit, Dept. of Pediatrics
AIIMS (India) Regional Molecular Genetics Lab, St. Mary's Hospital, Manchester, U.K. |
Kabra M,
Wallace A J, Ghosh M, Kabra S K, Verma I C (Dec 11, 1996) |
Note: (L997F)The mutation was detected by SSCP heteroduplex analysis and characterised by direct sequencing. This mutation was observed in a 5 year old North Indian boy, born to consangueinous parents migrated from Pakistan. He had a borderline high sweat chloride value and features highly suggestive of cystic fibrosis. He was heterozygous for this mutation.
This work was supported by the British Pediatric Association. Contact: Andrew Wallace |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
279A/G |
A->G at 279 |
2 |
No change (Leu at 49) |
Laboratoire de Biochimie et G�n�tique Mol�culaire
Paris, France |
Bienvenu T,
Bousquet S, Beldjord C (Dec 12, 1996) |
S1255L |
C->T at 3896 |
20 |
Ser->Leu at 1255 |
Laboratoire de Biochimie & Génétique Moléculaire
Paris, France |
As above |
Note: (279A/G)We would like to report to the consortium one novel mutation located in exon 20 of the CFTR gene and one novel sequence variation located in exon 2 of the CFTR gene. The missense mutation was detected by DGGE and identified by direct sequencing. The mutation S1255L (C->T at 3896) is not found in 200 other non-[delta]F508 CF chromosomes and 200 non CF chromosomes tested. Two other CF mutations have been identified at the same codon (S1255L)The missense mutation was detected by DGGE and identified by direct sequencing. The mutation S1255L (C->T at 3896) is not found in 200 other non-[delta]F508 CF chromosomes and 200 non CF chromosomes tested. Two other CF mutations have been identified at the same codon Contact: Thierry Bienvenu |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
2723delTT |
deletion of TT from 2723 |
14a |
frameshift |
Athens University, First Dept of Pediatrics
Unit of Molecular Medicine St. Sophias Children Hospital Athens, Greece |
Antoniadi T,
Tzetis M, Kanavakis E (Dec 12, 1996) |
N1432K |
C->G at 4428 |
24 |
polymorphism |
As above |
As above |
Note: (2723delTT)The mutation was found once in a patient of Serbian origin.
Patient data: Genotype: (N1432K)The C->G substitution at nucleotide 4428 results in the replacement of Asparagine for Lysine at aminoacid 1432. We suggest it is a polymorphism since it was not found among 100 pathological chromosomes screened and found once among 60 normal chromosomes screened. The carrier of N1432K is the mother of a CF patient; she has [delta]F508 in trans, and the chloride sweat test is normal. Contact: Emmanuel Kanavakis |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
L867X |
T->A at 2732 |
14a |
Leu->Stop at 867 |
Royal Manchester Children's Hospital,
England |
Haworth A,
Malone G, Schwarz M (Dec 16, 1996) |
Note: (L867X)The mutation was detected by DGGE analysis and identified by direct DNA sequencing. The mutation was found in a Scottish CF patient whose other mutation is [delta]F508 and who was referred from the Duncan Guthrie Institute of Medical Genetics, Glasgow. We have seen L867X only once in over 100 non-[delta]F508 chromosomes screened. The DGGE primers were generously supplied by Prof. Michel Goossens on behalf of the European Community Concerted Action for the Co-ordination of Cystic Fibrosis Research and Therapy. Contact: Martin Schwarz |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
W1282C |
G->T at 3978 |
20 |
Trp->Cys at 1282 |
Laboratoire de Biogénétique,
University of Brest, Brest, France |
Férec C,
Verlingue C, Quere I, Mercier B (Dec 30, 1996) |
H939R |
A->G at 2948 |
15 |
His->Arg at 939 |
As above |
As above |
T908N |
C->A at 2788 |
15 |
missense |
As above |
As above |
Note: (W1282C)Found by DGGE and DNA sequencing.
(CF patient, genotype [delta]F508/W1282C) (H939R)Found by DGGE and DNA sequencing. (CF patient, genotype [delta]F508/H939R) (T908N)Found by DGGE and DNA sequencing. (CBAVD patient, genotype [delta]F508/T908N) Contact: Claude Férec |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
4096-3C->G |
C to G at 4096-3 |
intron 21 |
splice mutation? |
Institut de Biologie Montpellier |
Claustres M,
Guittard C, Desgorges M, Carles S (Jan 06, 1997) |
Note: (4096-3C->G)This mutation was found by DGGE and identified by direct sequencing in a homozygous patient from a Lebanese family.
It creates a Mnl I restriction site.
Contact: Mireille Claustres |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
L383S |
T->C at 1280 |
8 |
Leu->Ser at 383 |
IRO
Barcelona, Spain |
Casals T,
Ramos M D, Gimenez J, Nunes V, Estivill, X (Jan 07, 1997) |
Note: (L383S)The L383S mutation has been detected by DGGE and direct sequencing. The patient is a spanish man with CUAVD. Contact: Teresa Casals |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
Y1082H |
T to C at 3406 |
17b |
Tyr to His at 1082 |
Center for Medical Genetics,
John Hopkins Hospital Baltimore MD |
Egan M M,
Zhang J, Cutting G R (Jan 11, 1997) |
Note: (Y1082H)The Y1082H mutation was seen on 1 Caucasian chromosome in US. ASO analysis revealed that this alteration was not present on 100 non-CF Caucasian chromosomes. This mutation was found in a 9 year old patient with a diagnosis of asthma. Sweat testing was borderline with values of 58 and 52. Tests were negative for staph and pseudomonas. The mutation was found after screening of 16 common mutations ([Delta]F508, R117H, W1282X, 621+1G->T, R334W, R347P, A445E, [Delta]I507, 1717-1G->A, G542X, S549N, G551D, R553X, R560T, N1303K, 3849+10kbC->T) by reverse dot blot and 4 exons by DGGE. It is yet to be determined if a second CF mutation will be found. Contact: Garry R. Cutting |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
549C/T |
C->T at 549 |
4 |
No change (His at 139) |
Institut de Biologie Montpelier |
Claustres M,
Guittard C, Desgorges M, Carles S (Jan 16, 1997) |
Note: (549C/T)This polymorphism was found by DGGE in a normal individual originating from Hungary and identified by direct sequencing.
It creates a Fok I restriction site. Contact: Mireille Claustres |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
3079delTT |
deletion of TT from 3079 |
16 |
frameshift |
Royal Manchester Children's Hospital,
England |
Haworth A,
Malone G, Schwartz M (Jan 17, 1997) |
Note: (3079delTT)The mutation was detected by SSCP/heteroduplex analysis and identified by direct DNA sequencing. The mutation was seen in a baby girl whose other CF mutation is [delta]F508. We have seen it only once in 100 samples tested. Contact: Martin Schwarz |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
W401X(TGG->TAG) |
G->A at 1334 |
21 |
Trp->Stop at 401 |
Laboratoire de Biogénétique,
University of Brest Brest, France |
Férec C,
Verlingue C, Quere I, Mercier B (Jan 21, 1997) |
-834T/G |
T or G at -834 |
5' flanking |
polymorphism |
As above |
As above |
E1308X |
G to T at 4054 |
21 |
Glu to Stop at 1308 |
Laboratoire de Biog�n�tique,
University of Brest Brest, France |
F�rec C,
Verlingue C, Quere I, Mercier B (Jan 21, 1997) |
Note: (W401X(TGG->TAG))This mutation was detected by DGGE and DNA sequencing.
(CF patient, genotype F508/W401X)
The W401X is different from the W401X reported by Cuppens (change at 1335; TGG->TGA). (-834T/G)The presumed polymorphism was found in the CFTR gene by DGGE and DNA sequencing. (E1308X)Found in the CFTR gene by DGGE and DNA sequencing. (CF patient, genotype E1308X/G542X) Contact: Claude Férec |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
-102T->A |
T->A at -102 |
5' flanking |
regulatory mutation? |
Institut de Biologie Montpelier |
Claustres M,
Romey M C, Guittard C, Desgorges M, Carles S (Jan 30, 1997) |
Note: (-102T->A)This possible mutation(?) was found by DGGE then direct sequencing in the region upstream from the CFTR cap site. This change was not found in 200 normal alleles of our series. It was associated with the S549R(T->G) mutation in a CF patient who carries S945L on the other chromosome. It was also detected in another CF patient with genotype S549R(T->G)/[delta]F508, but no parental DNA was available at that time to further determine on which allele -102T->A is carried. Contact: Mireille Claustres |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
Y1032C |
A->G at 3227 |
17a |
Tyr->Cys at 1032 (CBAVD) |
Institut fur Humangenetik,
Medizinische Hochschule Hannover Hannover, Germany |
D�rk T,
Hughes D, Dworniczak B, Stuhrmann M (Jan 30, 1997) |
Note: (Y1032C)Mutation Y1032C was identified in a German CBAVD patient who is heterozygous for Y1032C and for the [delta]F508 deletion. Contact: Manfred Stuhrmann-Spangenberg |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
H484Y |
C->T at 1582 |
10 |
His->Tyr at 484 (CBAVD?) |
IRO, Barcelona, Spain |
Casals T,
Gimenez J, Ramos M D, Nunes V, Estivill X (Jan 31, 1997) |
E504X |
G to T at 1642 |
10 |
Glu to Stop at 504 |
IRO, Barcelona, Spain
Lab. Genetika, Curitiba, Brazil |
Casals T,
Gimenez J, Ramos M D, Nunes V, Estivill X, Faucz F, Raskin S, (Jan 31, 1997) |
Note: (H484Y)The H484Y mutation was detected by SSCA and direct sequencing. The patient is a Spanish man with CBAVD. (E504X)The mutation E504X was detected by SSCA and direct sequencing in a CF patient from Brazil (Afro-American origin). Contact: Teresa Casals |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
2896insAG |
insertion of AG after 2896 |
15 |
frameshift |
Institut de Biologie Montpellier
Laboratoire de Biochimie et Génétique Moléculaire |
Claustres M,
Guittard C, Desgorges M, Carles S and Bienvenu et al. (Feb 12, 1997) |
Note: (2896insAG)This mutation was found by DGGE and identified by DNA sequencing in a CBAVD patient who carries D1152H on the other chromosome. This insertion leads to a stop codon at the next residue (codon 923).
It does not modifiy any restriction site.
This frameshift mutation was also found by Bienvenu T, Bousquet S, Kaplan JC, Beldjord C (March 21, (NL#69)) by DGGE and direct sequencing. This mutation 2894 Ins AG is not found in 200 other non-[delta]F508 CF chromosomes and 200 non CF chromosomes tested. It was found in a CF adult male patient, currently 20 years of age. The patient presents a classical form of CF. The patient has [delta]F508 on the other chromosome.
Contact: Mireille Claustres |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
406-6T->C |
T->C at 406-6 |
intron 3 |
polymorphism? |
Laboratoire de Biog�n�tique,
Brest, France |
F�rec C (Feb 13, 1997) |
Note: (406-6T->C)We have found a child with the following genotype 406-6T->C/[delta]F508, he is symptom free as the sweat test is normal. This results allows us to think that the 406-6t->C is a polymorphism. Contact: Claude Férec |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
L206F |
G->T at 750 |
6a |
Leu->Phe at 206 |
University of Brest
Brest, France |
Férec C,
Verlingue C, Quere I, Mercier B (Feb 14, 1997) |
Note: (L206F)We would like to report a novel mutation we have identified by DGGE and direct sequencing. Contact: Claude Férec |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
I1230T |
T to C at 3821 |
19 |
Ile to Thr at 1230 |
Institut de Biologie Montpellier |
Claustres M,
Maugard C (Mar 21, 1997) |
Note: (I1230T)This putative mutation was found by DGGE and identified by DNA sequencing. It does not modify any restriction site. Contact: Mireille Claustres |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
W57R |
T->C at 301 |
3 |
Trp->Arg at 57 |
Royal Manchester Children's Hospital,
England |
Malone G,
Haworth A, Schwarz M (Mar 21, 1997) |
Note: (W57R)The mutation was detected by SSCP/heteroduplex analysis and identified by direct DNA sequencing. The mutation was seen in a female referred by the West Midland Regional Genetics Service; her other CF mutation is [delta]F508. We have seen it only once in over 200 non[delta]F508 CF chromosomes screened. Contact: Martin Schwarz |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
449del8 |
deletion of GCTTCCTA from 449 |
4 |
frameshift |
Stanford University |
Vassilakis A,
Hurlock G, Wagner J, Moss R, Wine J J (Apr 13, 1997) |
G970Y |
G to A at 3041 |
16 |
Gly to Tyr at 970 |
As above |
As above |
Note: (449del8)The above mutation was found by SSCP/HA in a compound heterozygote; the other mutation is G970Y. Further patient information will be reported. (G970Y)The above mutation was found by SSCP/HA in a compound heterozygote; the other mutation is an 8 nt deletion in exon 4. Further patient information will be reported. Contact: Jeffrey Wine |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
P1021S |
C to T at 3193 |
17a |
Pro to Ser at 1021 (CBAVD) |
IRO,
Spain |
Casals T,
Gimenez J, Ramos M D, Nunes V, Estivill X (Apr 16, 1997) |
Note: (P1021S)The P1021S mutation has been detected by SSCA and direct sequencing. The mutation was identified in a Spanish man with CBAVD carrying a [delta]F508 on the other chromosome. Contact: Teresa Casals |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
D1305E |
T to A at 4047 |
21 |
Asp to Glu at 1305 |
Institut de Biologie Montpellier |
Claustres M,
Guitard C, Desgorges M, Carles S (May 13, 1997) |
Note: (D1305E)This possible mutation was found by DGGE and identified by DNA sequencing in a CBAVD patient who carries [Delta]F508 on the other chromosome. It destroys a BstY I restriction site. Contact: Mireille Claustres |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
1863C/T |
C or T at 1863 |
12 |
No change; Tyr at 577 (Polymorphism) |
Royal Manchester Children's Hospital,
England |
Larder R,
Byrne K, Malone G, Haworth A, Schwarz M (May 28, 1997) |
Note: (1863C/T)The mutation was detected by DGGE analysis and identified by direct DNA sequencing. The mutation was seen on the normal chromosome of a father of a CF patient. We have seen it only once, in over 100 non-[Delta]F508 chromosomes screened. The DGGE primers were generously supplied by Prof. Michel Goossens on behalf of the European Community Concerted Action for the Co-ordination of Cystic Fibrosis Research and Therapy. Contact: Martin Schwarz |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
1898+5G->A |
G to A at 1898+5 |
Intron 12 |
Splice mutation |
Laboratoire de Biog�n�tique |
F�rec C,
Verlingue C, Quere I, Mercier B (Jun 03, 1997) |
1863T/G |
T or G at 1863 |
12 |
No change (Tyr 577) (polymorphism) |
As above |
As above |
S977F |
C to T at 3062 |
16 |
Ser to Phe at 977 |
As above |
As above |
K698R |
A to G 2225 |
13 |
Lys to Arg at 698 |
As above |
As above |
I132M |
T to G at 528 |
4 |
Ile to Met at 132 (polymorphism?) |
As above |
As above |
V1293I |
G to A at 4009 |
21 |
Val to Ile at 1293 (Polymorphism?) |
As above |
As above |
Note: (1898+5G->A)The CF patient is heterozygous for DF508 and 1898+5G->A. (1863T/G)No comment provided. (S977F)The CF patient has G542X and S977F. (K698R)The patient has DF508 and K698R. (I132M)Found in the wife of a CBAVD patient. It is unclear if the change is a polymorphism or missense mutation. (V1293I)The change was found in the husband of a CF carrier. Contact: Claude Férec |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
Q781X |
C to T at 2473 |
13 |
Gln to Stop at 781 |
Departments of Pathology and Medicine,
University of North Carolina, Chapel Hill, NC, USA |
Zhou Z,
Friedman K, Blalock M, Silverman L, Knowles M, Yankaskas J (Jun 03, 1997) |
Note: (Q781X)Using SSCP followed by Sequencing analysis, we identified a CF mutation that has not been reported previously. A C-to-T transition at nucleotide 2473 in exon 13 led to change of glutamine 781 to a stop codon (Q781X). This mutation is associated with severe CF phenotype in a Caucasian family. Two affected brothers who are compound heterozygotes of Q781X/1717-1G>A have classic presentations of CF with pancreatic insufficiency. To estimate the frequency of the mutation Q781X, we examined 72 DNA samples from pancreatic insufficient patients who are heterozygous for DF508 with an unidentified mutation. The results showed that none of these 72 non-related patients carries this
mutation. We conclude that this newly identified CF mutation, Q781X, is very likely a private mutation with extremely low frequency. Contact: Jackie Zhaoqing Zhou |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
R600G |
A to G at 1930 |
13 |
Arg to Gly at 600 |
Laboratoire de Biochimie G�n�tique,
Pavillon Cassini, Paris, France |
Bienvenu T,
Bousquet S, Vidaud D, Keyeux G, Beldjord C (Jun 13, 1997) |
H609R |
A to G at 1958 |
13 |
His to Arg at 609 |
As above |
As above |
Note: (R600G)This mutation was detected by DGGE and identified by direct sequencing. R600G is not found in 100 other non-[Delta]F508 CF chromosomes and 100 non CF chromosomes tested. The mutation destroys an Mael site. It was found in a CF female patient, currently 43 years of age. The patient presents a classical form of CF with pancreatic sufficiency. (H609R)This mutation was detected by DGGE and identified by direct sequencing. H609R is not found in 100 other non-[Delta]F508 CF chromosomes and 100 non CF chromosomes tested. The mutation creates an MaeII site. It was found in a CF patient originating from Columbia. Contact: Thierry Bienvenu |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
R297W |
C->T at 1021 |
7 |
arg to trp at 297 |
Medizinische Hochschule Hannover,
Hannover, Germany |
D�rk T,
Frye H, Stuhrmann M (Jun 20, 1997) |
1366delG |
deletion of G at 1366 |
9 |
frameshift |
As above |
As above |
Note: (R297W)Missense mutation R297W was identified in a Vietnamese CBAVD patient who is heterozygous for R297W and for the 5T allele. Both chromosomes also carry the Q1352H missense variant in exon 22. (1366delG)Frameshift mutation 1366delG was identified in a German CF patient who is heterozygous for 1366delG and for the G542X mutation. Contact: Manfred Stuhrmann-Spangenberg |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
4005+2T->C |
T to C at 4005+2 |
20 |
Splice mutation |
Department of Medical Genetics,
Haukeland Hospital, Norway |
Boman H (Jun 28, 1997) |
Note: (4005+2T->C)We screened 27 pediatric CF-patients from Western Norway for CFTR mutations by SSCP followed by direct sequencing. In three unrelated patients (all with another known CF-allele) we identified the same
shift in exon 20. The PCR primers were 20a and 20B. The mutation causes loss of a natural HphI restriction site. Wild type: 473 bp in three fragments: 70, 137 and 266 bp. Mutated Allele: two fragments: 70 and 403 bp. Next to delF508, this mutation is the most commonly encountered in our CF population. This Bergen mutation was also commonly occurring in Oslo, but it was not found in Copenhagen (personal communications from Kritin Eiklid and Marianne Schwartz).
In Norway, DF508 constitutes only about 60% of the CF-mutations (Eiklid et al Clin Genet 1993;44:12-14), in accordance with similar observations in Sweden (Acta Paediatr 1993:82:609). In Western Norway,
delF508 is less prevalent than the Norwegian mean (around 50%, unpublished). In addition to delF508, we routinely screen our CF patients for the most frequent 16 Northern European CF mutations,
including the Nordic mutution, 394delTT (Schwartz et al, Hum Genet 1994;93:157-61). The result is disappointing- we have so far only seen R117H and G551D (other than the mutation reported here). Contact: Helge Boman |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
1716+64A/C |
A or C at 1716+64 |
intron 10 |
Polymorphism |
Royal Manchester Children's Hospital,
England |
Malone G,
Haworth A, Byrne K, Schwarz M (Jul 03, 1997) |
Note: (1716+64A/C)This sequence change was detected by SSCP/heteroduplex analysis and identified by direct DNA sequencing. We have seen 1716+64A/C only once in over 100 non-[Delta]F508 chromosomes screened. Contact: Martin Schwarz |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
1098G/A |
G or A at 1098 |
7 |
No change (Val322) (Polymorphism) |
Medical Centre for Molecular Biology,
Institute of Biochemistry Slovenia |
Vouk K,
Komel R (Jul 17, 1997) |
Note: (1098G/A)This nucleotide change, G to A at position 1098 does not change amino acid at position 322 (V322V). This polymorphism has been detected by SSCP technique.
Contact: Katja Vouk |
Name | Nucleotide Change | Exon | Consequence | Institute | Contributors |
---|---|---|---|---|---|
S776X |
C to G at 2459 |
13 |
Ser to Stop at 776 |
Institut de Biologie Montpellier |
Claustres M,
Guittard C, Desgorges M, Carles S (Jul 23, 1997) |
2183delAA |
deletion of AA at 2183 |
13 |
Frameshift |
As above |
As above |
2703G/A |
G or A at 2703 |
14a |
No change (Lys at 857) (Polymorphism) |
As above |
Claustres M,
Guittard C, Desgorges M, Ramsay M (Jul 23, 1997) |
Note: (S776X)This nonsense mutation was found by DGGE and identified by DNA sequencing in a CF patient from Suthern France. It does not modifiy any restriction site. (2183delAA)This deletion was found by DGGE and identified by DNA sequencing in a CF patient from Lebanon with 3120+1G->A on the other chromosome. It does not modify any restriction site. (2703G/A)This polymorphism was found by DGGE and identified by DNA sequencing in a CF patient from South America. It creates a HindIII restriction site. Contact: Mireille Claustres |